python - (py)Spark Parallelized Maximum Likelihood Calculation -
i have 2 quick rookie questions on (py)spark. have dataframe below, want calculate likelihood of 'reading' column using scipy's multivariate_normal.pdf()
rdd_dat = spark.sparkcontext.parallelize([(0, .12, "a"),(1, .45, "b"),(2, 1.01, "c"),(3, 1.2, "a"), (4, .76, "a"),(5, .81, "c"),(6, 1.5, "b")]) df = rdd_dat.todf(["id", "reading", "category"]) df.show() +---+-------+--------+ | id|reading|category| +---+-------+--------+ | 0| 0.12| a| | 1| 0.45| b| | 2| 1.01| c| | 3| 1.2| a| | 4| 0.76| a| | 5| 0.81| c| | 6| 1.5| b| +---+-------+--------+
this attempt using userdefinedfunction
:
from scipy.stats import multivariate_normal pyspark.sql.functions import userdefinedfunction pyspark.sql.types import doubletype mle = userdefinedfunction(multivariate_normal.pdf, doubletype()) mean =1 cov=1 df_with_mle = df.withcolumn("mle", mle(df['reading']))
this runs without throwing error, when want @ resulting df_with_mle
, error below:
df_with_mle.show() error occurred while calling o149.showstring.
1) idea why getting error?
2) if wanted specify mean
, cov
, like: df.withcolumn("mle", mle(df['reading'], 1, 1))
, how can this?
the multivariate_normal.pdf() method scipy expecting receive series. column pandas dataframe series, column pyspark dataframe different kind of object (a pyspark.sql.column.column), scipy doesn't know how handle.
also, , won't keep function call running, function definition ends without specifying parameters - cov , mean aren't defined explicitly in api unless occur within method call. mean , cov integer objects until set them parameters , override defaults (mean=0, cov=1, scipy documentation:
multivariate_normal.pdf(x=df['reading'], mean=mean,cov=cov)
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